cool_seq_tool.data.data_downloads#
Handle acquisition of external data.
- class cool_seq_tool.data.data_downloads.DataDownload[source]#
Manage downloadable data files. Responsible for checking if files are available under expected locations, and fetching them if not.
Relevant methods are called automatically by data classes; users should not have to interact with this class under normal circumstances.
- get_lrg_refseq_gene_data()[source]#
Identify latest LRG RefSeq Gene file. If unavailable locally, download from NCBI FTP server.
- Return type:
Path
- Returns:
path to acquired LRG RefSeq Gene data file
- get_mane_summary()[source]#
Identify latest MANE summary data. If unavailable locally, download from NCBI FTP server.
- Return type:
Path
- Returns:
path to MANE summary file